PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.071070.1
Common NameCsa_2G068680, LOC101205542
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 1108aa    MW: 121882 Da    PI: 6.5462
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.071070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-23134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  Cucsa.071070.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 225
                     99*****************************9445444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  Cucsa.071070.1 226 QQLLLGIRRA 235
                     889****997 PP

2Auxin_resp119.52.7e-39260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+
  Cucsa.071070.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 343
                     79*********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-41125249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-19133225No hitNo description
SMARTSM010197.7E-23134236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083134236IPR003340B3 DNA binding domain
PfamPF023623.0E-21134235IPR003340B3 DNA binding domain
PfamPF065071.3E-34260343IPR010525Auxin response factor
PfamPF023098.6E-79931080IPR033389AUX/IAA domain
PROSITE profilePS5174527.5579951080IPR000270PB1 domain
SuperFamilySSF542778.5E-710121074No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MKTPANGAAG AAAAPNSNEG GLEKKIINPE LWQACAGPLV NLPPAGYHVV YFPQGHSEQV  60
AASLRKDVDG QVPNYPSLAS KLLCLLHNVT LHADPETDEV YAQMTLLPVP SFDKDALLRS  120
DLALKSNKPQ PEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQELVAKDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLLAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVSANQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKGSQWR NLQVGWDEST GGERRNRVSV  360
WEIEPVIAPF FICPPPFLRS KRPRQPGMPD DDSSDLDGIF KRTMFGDDFC MKDPQGYPGL  420
NLVQWMNMQN PSLSNSMQQN YMHSFSGSML PNLGSVDISR QLGLSNAQLP QSNNIQFNAQ  480
RLLSQAQQLD QLPKLPTSMN SLGSVVQPPQ QLDDMSQQTR QNLINQNAVS SQIQAQIMQQ  540
PHTNGILQQQ TALQNQQLQR NAPQNLQMQQ HQQILSQNQQ QNMNPSPHLE QLNHQLQMSD  600
NQVHIQMLQK FQQQPQSLLA QQSALQPSQL VQLPDQQRQS VDASQSFSRS MSSNQMLDIP  660
QSTPAAGPPS NALPQQAANC NGQTNNRFSN QHLQPKLPQL QQPASSTVLS DMSRPMGLPP  720
AQINNQLSAA TSSLITGVAG AGQSGITDDI PSCSTSPSTN NCSSLVQPVA NGRVHRTTGL  780
VEDVAQSTAT IFSSNTLDNM SPNANLVHKD LPQKTAVKPS LNISKNQSHG IFAQQTFLSG  840
VVAQTDFLDT SSSTTSACLS QNDAQLQQNN MMSFNSQPML FKDNSQDLEV PTDLHNIPYG  900
NHVDGQMVAQ LSSDPLLDKG IGGLGKDFSN NFSSGAMLTT YDAQKDPQQE ISSSIVSQSF  960
GIPDMTFNSM DSTINDNTFL NRNQWAPPPP FQRMRTYTKV YKRGAVGRSI DIARYSGYDE  1020
LKQDLARRFG IEGQLEDRQK IGWKLVYVDH ENDVLLVGDD PWDDFVNCVR SIKILSPQEV  1080
QQMSLDGDIG NGVLPNQACS SSDGGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681836442388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1126720.0AB112672.1 Cucumis sativus CsARF2 mRNA for auxin response factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648969.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0A0LGX60.0A0A0A0LGX6_CUCSA; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Saito Y, et al.
    Isolation of cucumber CsARF cDNAs and expression of the corresponding mRNAs during gravity-regulated morphogenesis of cucumber seedlings.
    J. Exp. Bot., 2004. 55(401): p. 1315-23
    [PMID:15133054]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]